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1

MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

Vilas, Jose Luis, Gómez-Blanco, Josué, Conesa, Pablo, Melero, Roberto, Miguel de la Rosa-Trevín, José, Otón, Joaquin, Cuenca, Jesús, Marabini, Roberto, Carazo, José María, Vargas, Javier, Sorzano, Car

Journal:

Year:

2018

Language:

english

File:

PDF, 3.50 MB

english, 2018

2

Measuring local-directional resolution and local anisotropy in cryo-EM maps

Vilas, Jose Luis, Tagare, Hemant D., Vargas, Javier, Carazo, Jose Maria, Sorzano, Carlos Oscar S.

Journal:

Nature Communications

Year:

2020

Language:

english

File:

PDF, 1.57 MB

english, 2020

3

Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra

Carlos Oscar S Sorzano, Abraham Otero, Estefanía M Olmos, José María Carazo

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 1.62 MB

english, 2009

4

Image processing for electron microscopy single-particle analysis using XMIPP

Scheres, Sjors H W, Núñez-Ramírez, Rafael, Sorzano, Carlos O S, Carazo, José María, Marabini, Roberto

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 608 KB

english, 2008

5

SPI-EM: Towards a Tool For Predicting CATH Superfamilies in 3D-EM Maps

Javier A. Velázquez-Muriel, Carlos O.S. Sorzano, Sjors H.W. Scheres, José-María Carazo

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.14 MB

english, 2005

6

Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images

Sjors H.W. Scheres, Mikel Valle, Rafael Nuñez, Carlos O.S. Sorzano, Roberto Marabini, Gabor T. Herman, Jose-Maria Carazo

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 421 KB

english, 2005

7

Image formation in cellular X-ray microscopy

Joaquin Oton, C.O.S. Sorzano, Eva Pereiro, Jesús Cuenca-Alba, Rafael Navarro, Jose M. Carazo, Roberto Marabini

Journal:

Journal of Structural Biology

Year:

2012

Language:

english

File:

PDF, 628 KB

english, 2012

8

Iterative Elastic 3D-to-2D Alignment Method Using Normal Modes for Studying Structural Dynamics of Large Macromolecular Complexes

Jin, Qiyu, Sorzano, Carlos Oscar S., de la Rosa-Trevín, José Miguel, Bilbao-Castro, José Román, Núñez-Ramírez, Rafael, Llorca, Oscar, Tama, Florence, Jonić, Slavica

Journal:

Year:

2014

Language:

english

File:

PDF, 2.56 MB

english, 2014

9

Autofocused 3D Classification of Cryoelectron Subtomograms

Chen, Yuxiang, Pfeffer, Stefan, Fernández, José Jesús, Sorzano, Carlos Oscar S., Förster, Friedrich

Journal:

Year:

2014

Language:

english

File:

PDF, 1.83 MB

english, 2014

10

Hybrid Electron Microscopy Normal Mode Analysis graphical interface and protocol

Sorzano, Carlos Oscar S., de la Rosa-Trevín, José Miguel, Tama, Florence, Jonić, Slavica

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 1.16 MB

english, 2014

11

Vaccinia Virus with Selective Deletions Enhances T Cell Response to HIV Antigens by Specific Neutrophil Recruitment

Di Pilato, Mauro, Mejías-Pérez, Ernesto, Zonca, Manuela, Perdiguero, Beatriz, Gómez, Carmen Elena, Trakala, Marianna, Nieto, Jacobo, Nájera, José Luis, Sorzano, Carlos Oscar S., Planelles, Lourdes, Es

Journal:

AIDS Research and Human Retroviruses

Year:

2014

Language:

english

File:

PDF, 66 KB

english, 2014

12

[IEEE 2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008) - Paris, France (2008.05.14-2008.05.17)] 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Flexible image registration for the identification of best fitted protein models in 3D-EM maps

Fernandez-de-Manuel, Laura, Ledesma-Carbayo, Maria J., Atienza-Herrero, Julian, Sorzano, Carlos O. S., Carazo, Jose-Maria, Santos, Andres

Year:

2008

Language:

english

File:

PDF, 238 KB

english, 2008

13

Alignment of direct detection device micrographs using a robust Optical Flow approach

Abrishami, Vahid, Vargas, Javier, Li, Xueming, Cheng, Yifan, Marabini, Roberto, Sorzano, Carlos Óscar Sánchez, Carazo, José María

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 2.77 MB

english, 2015

14

NFκB activation by modified vaccinia virus as a novel strategy to enhance neutrophil migration and HIV-specific T-cell responses

Di Pilato, Mauro, Mejías-Pérez, Ernesto, Zonca, Manuela, Perdiguero, Beatriz, Gómez, Carmen Elena, Trakala, Marianna, Nieto, Jacobo, Nájera, José Luis, S. Sorzano, Carlos Oscar, Combadière, Christophe

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.86 MB

english, 2015

15

On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy

Marabini, Roberto, Macias, Jose Ramon, Vargas, Javier, Quintana, Adrian, Sorzano, Carlos Oscar S., Carazo, Jose María

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2013

Language:

english

File:

PDF, 850 KB

english, 2013

16

Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star

Otón, Joaquín, Sorzano, Carlos Oscar S., Marabini, Roberto, Pereiro, Eva, Carazo, Jose M.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

17

A U.S. Offensive at the U.N. (Statements by the U.S. Delegation before the General Assembly) || U.S. Commitment to International Economic Development

Journal:

Year:

1981-1982

Language:

english

File:

PDF, 829 KB

english, 1981-1982

18

3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling

Segura, Joan, Sanchez-Garcia, Ruben, Tabas-Madrid, Daniel, Cuenca-Alba, Jesus, Sorzano, Carlos Oscar S., Carazo, Jose Maria

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

19

Macromolecular Dynamics by Hybrid Electron Microscopy Normal Mode Analysis

Jin, Qiyu, Carlos Oscar, S. Sorzano, de la Rosa-Trevín, Jose Miguel, Tama, Florence, Jonić, Slavica

Journal:

Microscopy and Microanalysis

Year:

2014

Language:

english

File:

PDF, 1.29 MB

english, 2014

20

StructMap: Elastic Distance Analysis of Electron Microscopy Maps for Studying Conformational Changes

Sanchez Sorzano, Carlos Oscar, Alvarez-Cabrera, Ana Lucia, Kazemi, Mohsen, Carazo, Jose María, Jonić, Slavica

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 2.39 MB

english, 2016

21

Cryo-soft X-ray tomography as a quantitative three-dimensional tool to model nanoparticle:cell interaction

Chiappi, Michele, Conesa, José Javier, Pereiro, Eva, Sorzano, Carlos Oscar Sánchez, Rodríguez, María Josefa, Henzler, Katja, Schneider, Gerd, Chichón, Francisco Javier, Carrascosa, José L.

Journal:

Journal of Nanobiotechnology

Year:

2016

Language:

english

File:

PDF, 2.22 MB

english, 2016

22

Restoring U.S. Influence in the United Nations: Five Proposals

Sorzano, José S.

Journal:

American Foreign Policy Newsletter

Year:

1985

Language:

english

File:

PDF, 1.05 MB

english, 1985

23

XTEND: Extending the depth of field in cryo soft X-ray tomography

Otón, Joaquín, Pereiro, Eva, Conesa, José J., Chichón, Francisco J., Luque, Daniel, Rodríguez, Javier M., Pérez-Berná, Ana J., Sorzano, Carlos Oscar S., Klukowska, Joanna, Herman, Gabor T., Vargas, Ja

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.53 MB

english, 2017

24

ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds

Cuenca-Alba, Jesús, del Cano, Laura, Blanco, Josué Gómez, de la Rosa Trevín, José Miguel, Mingo, Pablo Conesa, Marabini, Roberto, S. Sorzano, Carlos Oscar, Carazo, Jose María

Journal:

Journal of Structural Biology

Year:

2017

Language:

english

File:

PDF, 732 KB

english, 2017

25

Separating Actin-Dependent Chemokine Receptor Nanoclustering from Dimerization Indicates a Role for Clustering in CXCR4 Signaling and Function

Martínez-Muñoz, Laura, Rodríguez-Frade, José Miguel, Barroso, Rubén, Sorzano, Carlos Óscar S., Torreño-Pina, Juan A., Santiago, César A., Manzo, Carlo, Lucas, Pilar, García-Cuesta, Eva M., Gutierrez,

Journal:

Year:

2018

Language:

english

File:

PDF, 3.96 MB

english, 2018

26

3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures

Sanchez-Garcia, Ruben, Sorzano, Carlos, Carazo, Jose, Segura, Joan

Journal:

Year:

2017

Language:

english

File:

PDF, 355 KB

english, 2017

27

Electron Microscopy Structural Insights into CPAP Oligomeric Behavior: A Plausible Assembly Process of a Supramolecular Scaffold of the Centrosome

Alvarez-Cabrera, Ana L., Delgado, Sandra, Gil-Carton, David, Mortuza, Gulnahar B., Montoya, Guillermo, Sorzano, Carlos O. S., Tang, Tang K., Carazo, Jose M.

Journal:

Frontiers in Molecular Biosciences

Year:

2017

Language:

english

File:

PDF, 2.73 MB

english, 2017

28

Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution

Otón, Joaquín, Pereiro, Eva, Pérez-Berná, Ana J., Millach, Laia, Sorzano, Carlos Oscar S., Marabini, Roberto, Carazo, José M.

Journal:

Biomedical Optics Express

Year:

2016

Language:

english

File:

PDF, 4.63 MB

english, 2016

29

Separating Actin-Dependent Chemokine Receptor Nanoclustering from Dimerization Indicates a Role for Clustering in CXCR4 Signaling and Function

Martínez-Muñoz, Laura, Rodríguez-Frade, José Miguel, Barroso, Rubén, Sorzano, Carlos Óscar S., Torreño-Pina, Juan A., Santiago, César A., Manzo, Carlo, Lucas, Pilar, García-Cuesta, Eva M., Gutierrez,

Journal:

Year:

2018

Language:

english

File:

PDF, 143 KB

english, 2018

30

X-ray structure of full-length human RuvB-Like 2 – mechanistic insights into coupling between ATP binding and mechanical action

Silva, Sara T. N., Brito, José A., Arranz, Rocío, Sorzano, Carlos Óscar S., Ebel, Christine, Doutch, James, Tully, Mark D., Carazo, José-María, Carrascosa, José L., Matias, Pedro M., Bandeiras, Tiago

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.78 MB

english, 2018

31

Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy

Sorzano, Carlos Oscar S., Martínez-Muñoz, Laura, Cascio, Graciela, García-Cuesta, Eva M., Vargas, J., Mellado, Mario, Rodriguez Frade, Jose Miguel

Journal:

Journal of Visualized Experiments

Year:

2019

File:

PDF, 791 KB

2019

32

Measuring local-directional resolution and local anisotropy in cryo-EM maps

Vilas, Jose Luis, Tagare, Hemant D., Vargas, Javier, Carazo, Jose Maria, Sorzano, Carlos Oscar S.

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.57 MB

2020

33

FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy

StÅelÃ¡k, David, FilipoviÄ, JiÅÃ, JimÃ©nez-Moreno, Amaya, Carazo, Jose MarÃa, SÃ¡nchez Sorzano, Carlos Ãscar

Journal:

Year:

2020

File:

PDF, 32.66 MB

2020